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Sebastien Theil's avatar
opened issue #10 "function request" at UMR-BOA / ViSEAGO
FRANKLIN Ellis's avatar
opened issue #9 "Error in ViSEAGO::EntrezGene2GO() function" at UMR-BOA / ViSEAGO
Aurelien Brionne's avatar
pushed new branch devel at UMR-BOA / ViSEAGO
HILPERT Cecile's avatar
closed issue #8 "url error for Uniprot annotate" at UMR-BOA / ViSEAGO
HILPERT Cecile's avatar
commented on issue #8 "url error for Uniprot annotate" at UMR-BOA / ViSEAGO

My bad, I didn't change Uniprot_id value......

HILPERT Cecile's avatar
opened issue #8 "url error for Uniprot annotate" at UMR-BOA / ViSEAGO
HILPERT Cecile's avatar
closed issue #8 "url error for Uniprot annotate" at UMR-BOA / ViSEAGO
HILPERT Cecile's avatar
opened issue #8 "url error for Uniprot annotate" at UMR-BOA / ViSEAGO
Aurelien Brionne's avatar
pushed to branch master at UMR-BOA / ViSEAGO
Aurelien Brionne's avatar
pushed to branch master at UMR-BOA / ViSEAGO
Aurelien Brionne's avatar
pushed to branch master at UMR-BOA / ViSEAGO
Pierre Blavy's avatar
opened issue #7 "Error in download.file(paste("ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/", : the 'internal' method for ftp:// URLs is defunct" at UMR-BOA / ViSEAGO
Sebastien Theil's avatar
opened issue #6 "Erreur dans hm$x$data[[col]] : un tel index n'existe pas au niveau 2" at UMR-BOA / ViSEAGO
Aurelien Brionne's avatar
closed issue #5 "Issue with fgsea merge" at UMR-BOA / ViSEAGO
Aurelien Brionne's avatar
commented on issue #5 "Issue with fgsea merge" at UMR-BOA / ViSEAGO

Please refer to the vignette for data.table input file to the ViSEAGO::runfgsea(). https://bioconductor.org/packages/release/bioc/vignettes/ViSEAG...

Aurelien Brionne's avatar
closed issue #4 "Demo file and merge_enrich_terms error" at UMR-BOA / ViSEAGO
TIM INRAE UMR1331's avatar
commented on issue #5 "Issue with fgsea merge" at UMR-BOA / ViSEAGO

I had the same problem. In fact, the parameter "geneSel" in runfgsea must be a data.table, not a data.frame.

Aurelien Brionne's avatar
pushed to branch master at UMR-BOA / ViSEAGO
Okondo Marian's avatar
opened issue #5 "Issue with fgsea merge" at UMR-BOA / ViSEAGO